BGSC Tools
Getting started
To Login If you are working off-campus, you will need VPN. Please visit (http://www.uwec.edu/Help/drives/vpn.htm). If you are using campus network, type 'ssh bgsc.uwec.edu' enter your 'university id' and 'password' to login
Using Slurm
To use Slurm, first make sure you load the module:
module load slurm
You can view the Slurm job queue by entering the command
squeue
To submit a job you must have these script flags in your submission file. Notice the comments after the flags. These comments explain what each flag is for and it's purpose.
#!/bin/bash
#SBATCH --partition=batch #Partition to submit to
#SBATCH --time=00:00:30 #Time limit for this job
#SBATCH --nodes=1 #Nodes to be used for this job during runtime
#SBATCH --ntasks-per-node=1 #Number of CPU's Per node
#SBATCH --mem=150 #Total memory for this job
#SBATCH --job-name="Slurm Sample" #Name of this job in work queue
#SBATCH --output=ssample.out #Output file name
#SBATCH --output=ssample.err #Error file name
#SBATCH –mail-user= #Email to send notifications to
#SBATCH --mail-type=ALL #Email notification type (BEGIN, END, FAIL, ALL)
The flags listed below are subject to change to the needs of your job.
#SBATCH --time=00:00:30 The time format here is DD-H:M:S
#SBATCH –ntasks-per-node=1
#SBATCH --mem=150
#SBATCH --job-name="Slurm Sample"
#SBATCH –output=ssample.out
#SBATCH –output=ssample.err
To submit your job to the job queue
sbatch
For a walk through video on this process please see the link below.
Contact us:
BGSC.ADMINS at uwec.edu
Commands for Backing up Data
Unix based OS:
scp -r ^username^@bgsc2.uwec.edu:/data/users//* ^desired location you wish to store on local machine^. See video above for more details.
Using PSCP:
pscp.exe -pw ^your password^ ^username^@bgsc2.uwec.edu:/data/users/^^username^^/* "C:\^desired location^"